SCSAP SPEAKER SPOTLIGHT

Itay Tirosh, Ph.D.

Associate Professor, Dept. of Molecular Cell Biology,

Weizmann Institute of Science

Abstract

Single cell analysis of tumors has enabled the characterization of diverse cancer cell states that are associated with metastasis, drug resistance, proliferation and other cancer phenotypes. For example, we uncovered cancer cellular states that recur across most patients with glioblastoma (GBM) or head and neck squamous cell carcinoma (HNSCC) and have important implications. However, these cellular states and their functions are highly dependent on the entire tumor ecosystem. To understand the organization of cell states we apply spatial transcriptomics and spatial proteomics to human tumors and develop computational approaches to analyze these datasets. In this talk I will describe our recent spatial studies in the two contexts that we focus on – glioblastoma and head and neck cancer.

Short Bio

Itay Tirosh obtained his PhD in computational biology from the Weizmann Institute of Science. From 2012 to 2017 he was a postdoctoral fellow at the Regev and Golub labs at the Broad Institute of MIT and Harvard, where he pioneered the application of single cell RNA sequencing to human tumors. Since 2017 he has been a PI at the Weizmann Institute of Science. The Tirosh lab is applying single cell and spatial technologies to clinical tumor samples, primarily in glioma and head and neck cancer, and combines that with extensive computational analysis.

Publications

 

The Society for Immunotherapy of Cancer Perspective on Tissue-Based Technologies for Immuno-Oncology Biomarker Discovery and Application.

Monette A, Aguilar-Mahecha A, Altinmakas E, Angelos MG, Assad N, Batist G, Bommareddy PK, Bonilla DL, Borchers CH, Church SE, Ciliberto G, Cogdill AP, Fattore L, Hacohen N, Haris M, Lacasse V, Lie WR, Mehta A, Ruella M, Sater HA, Spatz A, Taouli B, Tarhoni I, Gonzalez-Kozlova E, Tirosh I, Wang X, Gnjatic S.Clin Cancer Res. 2025 Feb 3;31(3):439-456. doi: 10.1158/1078-0432.CCR-24-2469.PMID: 39625818 Review.

A spatial expression atlas of the adult human proximal small intestine.

Harnik Y, Yakubovsky O, Hoefflin R, Novoselsky R, Bahar Halpern K, Barkai T, Korem Kohanim Y, Egozi A, Golani O, Addadi Y, Kedmi M, Keidar Haran T, Levin Y, Savidor A, Keren-Shaul H, Mayer C, Pencovich N, Pery R, Shouval DS, Tirosh I, Nachmany I, Itzkovitz S.Nature. 2024 Aug;632(8027):1101-1109. doi: 10.1038/s41586-024-07793-3. Epub 2024 Aug 7.PMID: 39112711
 

Single-cell atlas of the human brain vasculature across development, adulthood and disease.

Wälchli T, Ghobrial M, Schwab M, Takada S, Zhong H, Suntharalingham S, Vetiska S, Gonzalez DR, Wu R, Rehrauer H, Dinesh A, Yu K, Chen ELY, Bisschop J, Farnhammer F, Mansur A, Kalucka J, Tirosh I, Regli L, Schaller K, Frei K, Ketela T, Bernstein M, Kongkham P, Carmeliet P, Valiante T, Dirks PB, Suva ML, Zadeh G, Tabar V, Schlapbach R, Jackson HW, De Bock K, Fish JE, Monnier PP, Bader GD, Radovanovic I.Nature. 2024 Aug;632(8025):603-613. doi: 10.1038/s41586-024-07493-y. Epub 2024 Jul 10.PMID: 38987604 Free PMC article.

Oncogenic Calreticulin Induces Immune Escape by Stimulating TGFβ Expression and Regulatory T-cell Expansion in the Bone Marrow Microenvironment.

Schmidt D, Endres C, Hoefflin R, Andrieux G, Zwick M, Karantzelis N, Staehle HF, Vinnakota JM, Duquesne S, Mozaffari Jovein M, Pfeifer D, Becker H, Blazar BR, Zähringer A, Duyster J, Brummer T, Boerries M, Baumeister J, Shoumariyeh K, Li J, Green AR, Heidel FH, Tirosh I, Pahl HL, Leimkühler N, Köhler N, de Toledo MAS, Koschmieder S, Zeiser R.Cancer Res. 2024 Sep 16;84(18):2985-3003. doi: 10.1158/0008-5472.CAN-23-3553.PMID: 38885318 Free PMC article.

Integrative spatial analysis reveals a multi-layered organization of glioblastoma.

Greenwald AC, Darnell NG, Hoefflin R, Simkin D, Mount CW, Gonzalez Castro LN, Harnik Y, Dumont S, Hirsch D, Nomura M, Talpir T, Kedmi M, Goliand I, Medici G, Laffy J, Li B, Mangena V, Keren-Shaul H, Weller M, Addadi Y, Neidert MC, Suvà ML, Tirosh I.Cell. 2024 May 9;187(10):2485-2501.e26. doi: 10.1016/j.cell.2024.03.029. Epub 2024 Apr 22.PMID: 38653236 Free article.

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