Single Cell Spatial Analysis
Monthly Seminar Series
Next Seminar MARCH 17TH, 2025 (Cancelled to be rescheduled)
1:00-2:00 PM VIRTUAL ONLY- ZOOM
LOCATION: ZOOM
When: Mondays (typically 3rd or 4th Monday of the month)
Time: 1:00-2:00 pm as posted
Where: Hybrid Format (see below for details) Unless otherwise noted.
UPCOMING DATES
March 17, 2025
April 28, 2025
IN PERSON LOCATION
Zoom
NCRC Building 10 South Atrium
ZOOM INFORMATION
Meeting ID: 998 7259 4985
Passcode: 786053
Meeting ID: 998 7259 4985
Passcode: 786053
ZOOM LINK
March 17, 2025
Cancelled (To be rescheduled)
VIRTUAL ONLY- ZOOM
1:00-2:00 PM EST
Featuring: Itay Tirosh, Ph..D
Associate Professor, Dept. of Molecular Cell Biology
Weizmann Institute of Science
TITLE: Spatial organization of cell states in glioma and in head & neck cancer
February 10, 2025
IN-PERSON AND ZOOM
SOUTH ATRIUM, NCRC BUILDING 10 (Enter through Bldg 18, Lobby)
1:00-2:00 PM EST
(Join us for Lunch at 12:30)
Featuring: William L. Hwang, M.D., Ph.D.
Professor, Harvard Medical School
Physician-Scientist, Center for Systems Biology, Department of Radiation Oncology, Center for Cancer Research at MGH
Associate Faculty Member, Broad Institute of MIT and Harvard
Associate Director, Radiation Biology & Research Program at MGH
TITLE: Spatial oncology: tumor biology in context
January 27, 2025
IN-PERSON AND ZOOM
SOUTH ATRIUM, NCRC BUILDING 10 (Enter through Bldg 18, Lobby)
1:00-2:00 PM EST
Featuring: Jun Hee Lee, Ph.D.
Professor of Molecular and Integrative Physiology
Research Professor of Gerontology University of Michigan
TITLE: Seq-Scope-X: Bringing Spatial Omics to Nanoscale Precision
December 16, 2024
IN-PERSON AND ZOOM
Seminar will NOT be recorded
SOUTH ATRIUM, NCRC BUILDING 10 (Enter through Bldg 18, Lobby)
1:00-2:00 PM EST
Featuring: Toshiro Hara, Ph.D.
Assistant Professor, Neurosurgery, University of Michigan
TITLE: Dissecting cellular propensity and process of glioblastoma invasion using single-cell and spatial transcriptomics.
November 11, 2024
VIRTUAL ONLY
1:00-2:00 PM EST
Featuring: Roel Verhaak, PhD
Harvey and Kate Cushing Professor of Neurosurgery
Department of Neurosurgery
Yale School of Medicine
TITLE: Longitudinal single-cell analyses identify drivers of genetic, epigenomic, and cellular evolution in IDH-mutant glioma
October 14, 2024
In-Person
1:00-2:00 PM EST
Location: BSRB ABC Seminar Rooms
Featuring: Jeremie Oliver Piña, Ph.D., M.S., M.B.A.
Post-Doctoral Fellow/NICHD/NIH
TITLE: Spatial Multi-omics Reveals the Role of Wnt Signaling Modulators in Cleft Palate
September 23, 2024
In-Person
1:00-2:00 PM EST
Location: NCRC, BLDG 10, ROOMS G063/G064
Featuring: Qing Nie, Ph.D.
Department of Mathematics, Department of Developmental and Cell Biology, NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine
TITLE: Spatiotemporal reconstruction of single-cell omics data
June 10, 2024
VIRTUAL ONLY
Featuring: Longzhi Tan, Ph.D.
Assistant Professor, Department of Neurobiology, Stanford University
TITLE: 3D Genome Architecture across the Life Span
May 20, 2024
VIRTUAL ONLY
Featuring: Michael Elowitz Ph.D.
Howard Hughes Medical Institute Investigator and Professor of Biology and Biological Engineering, and Applied Physics, Caltech
TITLE: Many-to-many protein networks: computation modules for multicellular systems
April 29, 2024
HYBRID
In-Person: NCRC Building 18 – Dining Hall
Also available on Zoom
Featuring: Leilani Marty-Santos, Ph.D.
Spatial Science and Technology Advisor, 10x Genomics
Title: Experience the power of Visium Spatial and Xenium In Situ: From simple workflows to powerful visualization
March 25, 2024
VIRTUAL ONLY
Title: Magnify: 11-fold Expansion Microscopy with a Universal Molecule Anchoring Strategy and Broad Applications
Featuring: Yongxin (Leon) Zhao, Ph.D.,
Eberly Family Associate Professor of Biological Sciences, Carnegie Mellon University
February 26, 2024
IN-PERSON
BSRB A/B/C SEMINAR ROOM
Title: Turning Images into Knowledge: from Histopathology to Multimodal Spatial Biology
Featuring: Regan Baird, Ph.D., Global Research Program Director at Visiopharm
January 22, 2024
IN-PERSON (BSRB A/B/C Rooms)
and Virtual
Title: Giotto Suite: a multi-scale and technology-agnostic spatial multi-omics analysis framework
Featuring: Ruben Dries, Ph.D., Assistant Professor of Medicine,
Department of Hematology and Medical Oncology and Department of Computational Biology, Boston University School of Medicine
December 11, 2023
IN-PERSON (SPECIAL TIME 2-3 PM) and Virtual
Title: Spatial Multiomics: The Power of Single Cell, Whole Transcriptome and High-Plex Proteomics
Featuring: Seth Meyers Manager, Technical Sales, NanoString Technologies
November 27, 2023
VIRTUAL
Title: Spatial and Single-Cell Genomics for Next-Generation Neuroscience
Featuring: Evan Macosko, M.D., Ph.D. Associate Professor Psychiatry, Massachusetts General Hospital, Institute Member, Broad Institute
October 23, 2023
In-Person and Zoom
Title: The implications of cell type heterogeneity in translational and clinical sciences
Featuring: Lana Garmire, Ph.D. Associate Professor Department of Computational Medicine and Bioinformatics, Medical School, University of Michigan
September 25, 2023
FALL 2023 KICKOFF SEMINAR
In-Person ONLY
WILL NOT BE RECORDED
Title: MorphNet uses spatial transcriptomics to predict morphology from gene expression
Featuring: Joshua D. Welch, Ph.D., Assistant Professor, Department of Computational Medicine and Bioinformatics,
Department of Computer Science and Engineering, University of Michigan
June 19, 2023
In-Person (hybrid)
Title: Spatially informed cell-type deconvolution for spatial transcriptomics
Featuring: Ying Ma, PhD candidate Department of Biostatistics, University of Michigan
Join us via- Zoom Link
May 22, 2023
In-Person (hybrid)
Title: Spatially aware dimension reduction for spatial transcriptomics
Featuring: Lulu Shang, PhD candidate Department of Biostatistics, University of Michigan
Join us via- Zoom Link
April 17, 2023
In-Person (hybrid)
Title: : Batch integration with signal preservation of single cell data with control-pool designs”
Featuring: Nancy Ruonan Zhang, Ph.D., Ge Li and Ning Zhao Professor of Statistics, The Wharton School University of Pennsylvania
Join us via- Zoom Link
March 20, 2023
In-Person (hybrid)
Title: ChipCytometry Multiplexing: Practical, Approachable, Spatial Biology
Featuring: Spencer Schwarz, Product manager for ChipCytometry instrumentation and software, Canopy Biosciences
Join us via- Zoom Link
February 13, 2023
December 12, 2022
VIRTUAL ONLY
TITLE: MERSCOPE: Spatial Analysis Platform
FEATURING: Dr. George Emanuel
Abstract:
Biological systems are composed of numerous cell types, intricately organized to form functional tissues and organs. Cell atlas initiatives with single-cell RNA sequencing have begun to characterize cell types based on their RNA expression profiles. However, the tissue organization is lost when cells are dissociated for single-cell sequencing, making it difficult to study how the cellular heterogeneity is contributing to the function of the tissue.
In this presentation, we will introduce you to Vizgen’s all-in-one in situ genomics platform MERSCOPETM which enables the direct profiling of the spatial organization of intact tissue with genomic-scale throughput.
Join us via- Zoom Link
November 14, 2022
TITLE: Spatially resolved clonal copy number alterations in benign and malignant tissue, featuring Alastair Lamb, Oxford University.
FEATURING: Alastair Lamb MA(Oxon), MBChB, PhD(Cantab), FRCS(Urol) LEARN MORE
Join us one of three ways!
Watch it with other people on Zoom in one of our two location:
1) Forum Hall – Palmer Commons (snacks and drinks provided)
2) The NCRC Building (bldg 16, room 266C) (snacks and drinks provided)
3) Watch it from anywhere online – Zoom Link
October 3, 2022
TITLE: Topography of CNS malignancy
FEATURING: Dieter Henrik Heiland, MD PHD, Associate Professor of Neuro-Surgery, Medical Center University of Freiburg. LEARN MORE
Join us one of three ways!
In Person – Forum Hall – Palmer Commons (snacks and drinks provided)
Watch it with other people on Zoom in the NCRC Building (bldg 16, room 266C) (snacks and drinks provided)
Watch it from anywhere online – Zoom Link
September 19, 2022
((bldTitle: Cellular heterogeneity and tissue organization of mouse testis revealed by single-molecule mapping using MERFISH
Join us one of three ways!
In Person – Forum Hall – Palmer Commons (snacks and drinks provided)
Watch it with other people on Zoom in the NCRC Building (bldg 16, room 266C) (snacks and drinks provided)
Watch it from anywhere online – Zoom Link
June 20, 2022
Title: Boosting signal-to-noise in single cell RNA-Seq through molecular depletion
May 16, 2022
Title: UINMF performs mosaic integration of single-cell multi-omic datasets using nonnegative matrix factorization
Featuring: April R. Kriebel, PhD Candidate | Laboratory of Dr. Joshua Welch, Dept. of Computational Medicine & Bioinformatics, University of Michigan
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Zoom Meeting
https://umich.zoom.us/j/98601866850
Passcode: 674748
April 18, 2022
Title: “Perineural Invasion in Oral Cancer: Hitting a Nerve”.
Presented by: Nisha D’Silva, BDS, MSD, PhD Donald A Kerr Endowed Collegiate Professor of Oral Pathology, Professor of Dentistry, School of Dentistry and Professor of Pathology University of Michigan
Zoom Meeting
https://umich.zoom.us/j/98601866850
Passcode: 674748
March 21, 2022
Title: “Integration of single-cell and spatial-seq to gain novel insights into inflammatory skin diseases”.
Presented by: Johann E. Gudjonsson, MD, PhD. Arthur C. Curtis Professor of Skin Molecular Immunology and Professor Dermatology, and Taubman Medical Research Institute Scholar, at the University of Michigan.
Zoom Meeting
https://umich.zoom.us/j/98601866850
Passcode: 674748
February 21, 2022
Title: Accelerating the Next Generation of Immune Medicine with Cellular Proteomics at University of Michigan Single Cell Spatial Analysis Program
Presented by : Isoplexis – Brad Annen and Noah Vanderhyde
JOIN US AT THE END OF THE TECH TALK TO LEARN ABOUT AN EXCITING GRANT PROGRAM SPONSORED BY THE UNIVERSITY OF MICHIGAN SINGLE CELL SPATIAL ANALYSIS PROGRAM
Join Zoom Meeting
https://umich.zoom.us/j/98601866850
Passcode: 674748
January 17, 2022
Title: Single cell spatial map of the mice retina
Presented by Rui Chen, Ph.D.- Baylor College of Medicine Department of Molecular and Human Genetics
December 6, 2021
Title: The mutational landscape and clonal dynamics of Human Somatic and Germline cells
FEATURING: Raheleh Rahbari , Ph.D. – Sanger Institute
November 15, 2021
Title: Integrative Visualization of Multi-Modal and Spatially-Resolved Single-Cell Data
FEATURING: Nils Gehlenborg, PhD
Associate Professor of Biomedical Informatics, Harvard Medical School and Director, Master of Biomedical Informatics (MBI) Program
October 18, 2021
Title: “Morphologic Cell Profiling – from SARS-CoV-2 infection to Liver Organoids”
FEATURING: Dr. Jonny Sexton
University of Michigan, Department of internal medicine, Division of gastroenterology and hepatology
September 20, 2021
Title: “Mapping the Future with Spatial Genomics”.
FEATURING Dr. Jiang He, Director of Scientific Affairs for Vizgen.
Questions/Comments please contact us at
singlecellspatialanalysis@umich.edu