Single Cell Spatial Analysis
Monthly Seminar Series
Next Seminar October 23rd
When: Mondays (typically 3rd or 4th Monday of the month)
Time: 1:00-2:00 pm as posted
Where: Hybrid Format (see below for details) Unless otherwise noted.
UPCOMING DATES
November 27, 2023
IN PERSON LOCATION
Virtual Meeting
ZOOM INFORMATION
Zoom is available
ZOOM LINK
SEMINAR DATES
SEMINAR INFORMATION
ZOOM OR RECORDING
November 27, 2023
VIRTUAL
Title: Spatial and Single-Cell Genomics for Next-Generation Neuroscience
Featuring: Evan Macosko, M.D., Ph.D. Associate Professor Psychiatry, Massachusetts General Hospital, Institute Member, Broad Institute
October 23, 2023
In-Person and Zoom
Title: The implications of cell type heterogeneity in translational and clinical sciences
Featuring: Lana Garmire, Ph.D. Associate Professor Department of Computational Medicine and Bioinformatics, Medical School, University of Michigan
September 25, 2023
FALL 2023 KICKOFF SEMINAR
In-Person ONLY
WILL NOT BE RECORDED
Title: MorphNet uses spatial transcriptomics to predict morphology from gene expression
Featuring: Joshua D. Welch, Ph.D., Assistant Professor, Department of Computational Medicine and Bioinformatics,
Department of Computer Science and Engineering, University of Michigan
June 19, 2023
In-Person (hybrid)
Title: Spatially informed cell-type deconvolution for spatial transcriptomics
Featuring: Ying Ma, PhD candidate Department of Biostatistics, University of Michigan
Join us via- Zoom Link
May 22, 2023
In-Person (hybrid)
Title: Spatially aware dimension reduction for spatial transcriptomics
Featuring: Lulu Shang, PhD candidate Department of Biostatistics, University of Michigan
Join us via- Zoom Link
April 17, 2023
In-Person (hybrid)
Title: : Batch integration with signal preservation of single cell data with control-pool designs”
Featuring: Nancy Ruonan Zhang, Ph.D., Ge Li and Ning Zhao Professor of Statistics, The Wharton School University of Pennsylvania
Join us via- Zoom Link
March 20, 2023
In-Person (hybrid)
Title: ChipCytometry Multiplexing: Practical, Approachable, Spatial Biology
Featuring: Spencer Schwarz, Product manager for ChipCytometry instrumentation and software, Canopy Biosciences
Join us via- Zoom Link
February 13, 2023
December 12, 2022
VIRTUAL ONLY
TITLE: MERSCOPE: Spatial Analysis Platform
FEATURING: Dr. George Emanuel
Abstract:
Biological systems are composed of numerous cell types, intricately organized to form functional tissues and organs. Cell atlas initiatives with single-cell RNA sequencing have begun to characterize cell types based on their RNA expression profiles. However, the tissue organization is lost when cells are dissociated for single-cell sequencing, making it difficult to study how the cellular heterogeneity is contributing to the function of the tissue.
In this presentation, we will introduce you to Vizgen’s all-in-one in situ genomics platform MERSCOPETM which enables the direct profiling of the spatial organization of intact tissue with genomic-scale throughput.
Join us via- Zoom Link
November 14, 2022
TITLE: Spatially resolved clonal copy number alterations in benign and malignant tissue, featuring Alastair Lamb, Oxford University.
FEATURING: Alastair Lamb MA(Oxon), MBChB, PhD(Cantab), FRCS(Urol) LEARN MORE
Join us one of three ways!
Watch it with other people on Zoom in one of our two location:
1) Forum Hall – Palmer Commons (snacks and drinks provided)
2) The NCRC Building (bldg 16, room 266C) (snacks and drinks provided)
3) Watch it from anywhere online – Zoom Link
October 3, 2022
TITLE: Topography of CNS malignancy
FEATURING: Dieter Henrik Heiland, MD PHD, Associate Professor of Neuro-Surgery, Medical Center University of Freiburg. LEARN MORE
Join us one of three ways!
In Person – Forum Hall – Palmer Commons (snacks and drinks provided)
Watch it with other people on Zoom in the NCRC Building (bldg 16, room 266C) (snacks and drinks provided)
Watch it from anywhere online – Zoom Link
September 19, 2022
((bldTitle: Cellular heterogeneity and tissue organization of mouse testis revealed by single-molecule mapping using MERFISH
Join us one of three ways!
In Person – Forum Hall – Palmer Commons (snacks and drinks provided)
Watch it with other people on Zoom in the NCRC Building (bldg 16, room 266C) (snacks and drinks provided)
Watch it from anywhere online – Zoom Link
June 20, 2022
Title: Boosting signal-to-noise in single cell RNA-Seq through molecular depletion
May 16, 2022
Title: UINMF performs mosaic integration of single-cell multi-omic datasets using nonnegative matrix factorization
Featuring: April R. Kriebel, PhD Candidate | Laboratory of Dr. Joshua Welch, Dept. of Computational Medicine & Bioinformatics, University of Michigan
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Zoom Meeting
https://umich.zoom.us/j/98601866850
Passcode: 674748
April 18, 2022
Title: “Perineural Invasion in Oral Cancer: Hitting a Nerve”.
Presented by: Nisha D’Silva, BDS, MSD, PhD Donald A Kerr Endowed Collegiate Professor of Oral Pathology, Professor of Dentistry, School of Dentistry and Professor of Pathology University of Michigan
Zoom Meeting
https://umich.zoom.us/j/98601866850
Passcode: 674748
March 21, 2022
Title: “Integration of single-cell and spatial-seq to gain novel insights into inflammatory skin diseases”.
Presented by: Johann E. Gudjonsson, MD, PhD. Arthur C. Curtis Professor of Skin Molecular Immunology and Professor Dermatology, and Taubman Medical Research Institute Scholar, at the University of Michigan.
Zoom Meeting
https://umich.zoom.us/j/98601866850
Passcode: 674748
February 21, 2022
Title: Accelerating the Next Generation of Immune Medicine with Cellular Proteomics at University of Michigan Single Cell Spatial Analysis Program
Presented by : Isoplexis – Brad Annen and Noah Vanderhyde
JOIN US AT THE END OF THE TECH TALK TO LEARN ABOUT AN EXCITING GRANT PROGRAM SPONSORED BY THE UNIVERSITY OF MICHIGAN SINGLE CELL SPATIAL ANALYSIS PROGRAM
Join Zoom Meeting
https://umich.zoom.us/j/98601866850
Passcode: 674748
January 17, 2022
Title: Single cell spatial map of the mice retina
Presented by Rui Chen, Ph.D.- Baylor College of Medicine Department of Molecular and Human Genetics
December 6, 2021
Title: The mutational landscape and clonal dynamics of Human Somatic and Germline cells
FEATURING: Raheleh Rahbari , Ph.D. – Sanger Institute
November 15, 2021
Title: Integrative Visualization of Multi-Modal and Spatially-Resolved Single-Cell Data
FEATURING: Nils Gehlenborg, PhD
Associate Professor of Biomedical Informatics, Harvard Medical School and Director, Master of Biomedical Informatics (MBI) Program
October 18, 2021
Title: “Morphologic Cell Profiling – from SARS-CoV-2 infection to Liver Organoids”
FEATURING: Dr. Jonny Sexton
University of Michigan, Department of internal medicine, Division of gastroenterology and hepatology
September 20, 2021
Title: “Mapping the Future with Spatial Genomics”.
FEATURING Dr. Jiang He, Director of Scientific Affairs for Vizgen.
Questions/Comments please contact us at
singlecellspatialanalysis@umich.edu